Below some useful websites, software and other links with a short description (work in progress). I am updating this post over time.
Science:
- Evolution of evolution (EU Project)
- Bioinformatic Processes (Utrecht course)
- Dutch Society of Theoretical Biology
Text Editors:
Publishing:
Graphics:
Programming:
- Git
- Subversion
- Doxygen
- CMake
- GCC
- GDB
- Valgrind
- Boost Libraries
- GNU Scientific Library
- Xerces XML Parser
- OpenMPI
Python:
- Python
- Scipy
- Numpy
- Pandas
- Matplotlib
- Seaborn
- Paramiko
- Sqlite
- lxml
- Pillow (Python Imaging Library fork)
- Networkx
- Functional programming in Python
Bioinformatics:
Artistic: