Below some useful websites, software and other links with a short description (work in progress). I am updating this post over time.
Science:
- Inria’s Team Beagle
- Bioinformatic Processes (Utrecht course)
- Dutch Society of Theoretical Biology
- Proposal writing advice
Text Editors:
Publishing:
Graphics:
Programming:
- Git
- Subversion
- Doxygen
- CMake
- GCC
- GDB
- Valgrind
- Boost Libraries
- GNU Scientific Library
- Xerces XML Parser
- OpenMPI
Python:
- Python
- Scipy
- Numpy
- Pandas
- Matplotlib
- Seaborn
- Paramiko
- Sqlite
- lxml
- Pillow (Python Imaging Library fork)
- Networkx
- Functional programming in Python
Bioinformatics:
Artistic:
I received a kind email from Lucas and Maria: “We wanted to say “thanks a bunch!” from my son and I. Lucas told me he wants to be a software developer and I want to help but I’m not sure what he needs to study in terms of languages and order? I was trying to read up […] and saving tutorials for him from websites that don’t have any bad stuff on them. That’s why your big learning list here is awesome.”